Asymmetric Lee Distance Codes for DNA-Based Storage

We consider a new family of codes, termed asymmetric Lee distance codes, that arise in the design and implementation of DNA-based storage systems and systems with parallel string transmission protocols. The codewords are defined over a quaternary alphabet, although the results carry over to other alphabet sizes; furthermore, symbol confusability is dictated by their underlying binary representation. Our contributions are two-fold. First, we demonstrate that the new distance represents a linear combination of the Lee and Hamming distance and derive upper bounds on the size of the codes under this metric based on linear programming techniques. Second, we propose a number of code constructions which imply lower bounds

Local Codes with Addition Based Repair

We consider the complexities of repair algorithms for locally repairable codes and propose a class of codes that repair single node failures using addition operations only, or codes with addition based repair. We construct two families of codes with addition based repair. The first family attains distance one less than the Singleton-like upper bound, while the second family attains the Singleton-like upper bound

Rates of DNA Sequence Profiles for Practical Values of Read Lengths

A recent study by one of the authors has demonstrated the importance of profile vectors in DNA-based data storage. We provide exact values and lower bounds on the number of profile vectors for finite values of alphabet size $q$, read length $\ell$, and word length $n$.Consequently, we demonstrate that for $q\ge 2$ and $n\le q^{\ell/2-1}$, the number of profile vectors is at least $q^{\kappa n}$ with $\kappa$ very close to one.In addition to enumeration results, we provide a set of efficient encoding and decoding algorithms for each of two particular families of profile vectors

Locally Encodable and Decodable Codes for Distributed Storage Systems

We consider the locality of encoding and decoding operations in distributed storage systems (DSS), and propose a new class of codes, called locally encodable and decodable codes (LEDC), that provides a higher degree of operational locality compared to currently known codes. For a given locality structure, we derive an upper bound on the global distance and demonstrate the existence of an optimal LEDC for sufficiently large field size. In addition, we also construct two families of optimal LEDC for fields with size linear in code length.Comment: 7 page

Product Construction of Affine Codes

Binary matrix codes with restricted row and column weights are a desirable method of coded modulation for power line communication. In this work, we construct such matrix codes that are obtained as products of affine codes - cosets of binary linear codes. Additionally, the constructions have the property that they are systematic. Subsequently, we generalize our construction to irregular product of affine codes, where the component codes are affine codes of different rates.Comment: 13 pages, to appear in SIAM Journal on Discrete Mathematic

Verifiable Coded Computation of Multiple Functions

We consider the problem of evaluating distinct multivariate polynomials over several massive datasets in a distributed computing system with a single master node and multiple worker nodes. We focus on the general case when each multivariate polynomial is evaluated over its corresponding dataset and propose a generalization of the Lagrange Coded Computing framework (Yu et al. 2019) to perform all computations simultaneously while providing robustness against stragglers who do not respond in time, adversarial workers who respond with wrong computation and information-theoretic security of dataset against colluding workers. Our scheme introduces a small computation overhead which results in a reduction in download cost and also offers comparable resistance to stragglers over existing solutions. On top of it, we also propose two verification schemes to detect the presence of adversaries, which leads to incorrect results, without involving additional nodes.Comment: 13 pages, 1 figure, 2 table